BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB014D08LP1|AL426683
(731 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1619 1395 0.0
>3x_Contig1619
Length = 7770
Score = 1395 bits (702), Expect = 0.0
Identities = 727/733 (99%), Gaps = 4/733 (0%)
Strand = Plus / Minus
Query: 1 gatctaaatttatcttccccccgcggcatcacccaaccctagggttgggtgangccgcgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2543 gatctaaatttatcttccccccgcggcatcacccaaccctagggttgggtga-gccgcgg 2485
Query: 61 ggggctaataataattgaccctctaatgttttatgtaaaccatgttttataatgataata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2484 ggggctaataataattgaccctctaatgttttatgtaaaccatgttttataatgataata 2425
Query: 121 ctagaaaatcacattacaaaatcaatatattttctagtatataatccactatttaacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2424 ctagaaaatcacattacaaaatcaatatattttctagtatataatccactatttaacata 2365
Query: 181 gttggaaatacttgataatataatctatcagtactagaaatttaaaatctatatttatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 gttggaaatacttgataatataatctatcagtactagaaatttaaaatctatatttatta 2305
Query: 241 ctatcttccccgcggactcctcccctttaaagggattaccaggggaggagccgcggggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2304 ctatcttccccgcggactcctcccctttaaagggattaccaggggaggagccgcggggtt 2245
Query: 301 tataaattttattagtagatttaggtaaatcatataataaactattatcaggagttcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 tataaattttattagtagatttaggtaaatcatataataaactattatcaggagttcaat 2185
Query: 361 ttaaaatagtatcttgaatagccttcattaaatcttccccgcggtctccccccga--rga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2184 ttaaaatagtatcttgaatagccttcattaaatcttccccgcggtctccccccgaaggga 2125
Query: 419 ggagccgcgggtgaatttatatgttgagatacttctaaacttattttatagttattgttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 ggagccgcgggtgaatttatatgttgagatacttctaaacttattttatagttattgttt 2065
Query: 479 atatttttagaaatagctaaatgaccttcagcttcgataaatcctacaatatattcaata 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 atatttttagaaatagctaaatgaccttcagcttcgataaatcctacaatatattcaata 2005
Query: 539 ttaattttagaaataatatcatcatattccccgcscggctcgccctaccctacggtaggg 598
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2004 ttaattttagaaataatatcatcatattccccgcgcggctcgccctaccctacggtaggg 1945
Query: 599 cgatgccgcgc-ggggggagtatggtttgaagaattagtatttaattcttcatttaattt 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 cgatgccgcgcgggggggagtatggtttgaagaattagtatttaattcttcatttaattt 1885
Query: 658 attacataattctaatttaatatttttagaaattgtagaatcactagtagataatttata 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 attacataattctaatttaatatttttagaaattgtagaatcactagtagataatttata 1825
Query: 718 tattaataatatt 730
|||||||||||||
Sbjct: 1824 tattaataatatt 1812
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6672
Number of Sequences: 1807
Number of extensions: 6672
Number of successful extensions: 106
Number of sequences better than 1.0e-20: 1
length of query: 731
length of database: 10,358,551
effective HSP length: 16
effective length of query: 715
effective length of database: 10,329,639
effective search space: 7385691885
effective search space used: 7385691885
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.9 bits)